Search Pathway Commons:
To get started, enter a gene name, gene identifier or pathway name in the text box above.
For example: BRCA1,
P38398
or mTOR.
To restrict your search to specific data sources or specific organisms, update your
global filter settings.
Using Pathway Commons:
Biologists:
Browse and search pathways across multiple valuable public pathway databases.
Computational biologists:
Download an integrated set of pathways in BioPAX format for global analysis.
Software developers:
Build software on top of Pathway Commons using our web service API.
Download and install the cPath software to
create a local mirror.
What's New:
 July 24, 2008:
- Latest Reactome data set (June 30, 2008 Version 25).
- All human, mouse and rat proteins are now annotated with UniProt functional annotation.
- Improved search support for gene symbols.
ExecuteGetParentsXmlResponse - Stable links now available for linking out to protein pages.
- Numerous bug fixes and performance improvements.
- April 1, 2008: New features for visualizing pathways using Cytoscape [Details].
- February 1, 2008: New data sources, including: HPRD, IntAct, and MINT.
Improved web service API.
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Current Data Sources:
Pathway Commons currently contains the following data sources:
Pathway Commons Quick Stats:
| Number of Pathways: |
1,157 |
| Number of Interactions: |
258,636 |
| Number of Physical Entities: |
80,827 |
| Number of Organisms: |
1,005 |
Integration of additional data sources is planned in the near future. For a comprehensive directory
of interaction and pathway databases, please refer to Pathguide.
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